Publications
See a complete PubMed list of publications by Kyoung Jae Won, PhD.
Selected Key Publications
- Kim J, Rothová MM, Madan E, Rhee S, Weng G, Palma AM, Liao L, David E, Amit I, Won KJ, et al. Neighbor-specific gene expression revealed from physically interacting cells during mouse embryonic development. Proc Natl Acad Sci USA. 2023 Jan 10;120(2):e2205371120.
- Martin PCN, Kim H, Lövkvist C, Hong BW, Won KJ. Vesalius: high-resolution in silico anatomization of spatial transcriptomic data using image analysis. Mol Syst Biol. 2022 Sep;18(9):e11080.
- Chalabi Hajkarim M, Karjalainen E, Osipovitch M, Dimopoulos K, Gordon SL, Ambri F, Rasmussen KD, Grønbæk K, Helin K, Wennerberg K, Won KJ. Comprehensive and unbiased multiparameter high-throughput screening by compaRe finds effective and subtle drug responses in AML models. Elife. 2022 Feb 15;11:e73760.
- Kim J, T Jakobsen S, Natarajan KN, Won KJ. TENET: gene network reconstruction using transfer entropy reveals key regulatory factors from single cell transcriptomic data. Nucleic Acids Res. 2021 Jan 11;49(1):e1.
- Kim D, Kim J, Yu YS, Kim YR, Baek SH, Won KJ. Systemic approaches using single cell transcriptome reveal that C/EBPγ regulates autophagy under amino acid starved condition. Nucleic Acids Res. 2022 Jul 22;50(13):7298-7309
- Weng G, Kim J, Won KJ. VeTra: a tool for trajectory inference based on RNA velocity. Bioinformatics. 2021 May 11;37(20):3509-13.
- Wan S, Kim J, Won KJ. SHARP: hyperfast and accurate processing of single-cell RNA-seq data via ensemble random projection. Genome Res. 2020 Feb;30(2):205-213
- Kim YH, Marhon SA, Zhang Y, Steger DJ, Won KJ*, Lazar MA*. Rev-erbα dynamically modulates chromatin looping to control circadian gene transcription. Science. 2018 Mar 16;359(6381):1274-1277
- Condon DE, Tran PV, Lien YC, Schug J, Georgieff MK, Simmons RA, Won KJ. Defiant: (DMRs: easy, fast, identification and ANnoTation) identifies differentially Methylated regions from iron-deficient rat hippocampus. BMC Bioinformatics. 2018 Feb 5;19(1):31
- Kim J, Stanescu DE, Won KJ. CellBIC: bimodality-based top-down clustering of single-cell RNA sequencing data reveals hierarchical structure of the cell type. Nucleic Acids Res. 2018 Nov 30;46(21):e124
Contact the Won Lab
700 N. San Vicente Blvd.
Pacific Design Center, Suite G549-C
West Hollywood, CA 90069